nickbrazeau. To fix this you can add URL: https://plasmogenepi.r-universe.dev/polySimIBD to the package DESCRIPTION file. See also theR-universe documentation.Package: polySimIBD 1.1.0
Nick Brazeau
polySimIBD: Structured Wright Fisher Simulator for Malaria Genetics
Unique features of the malaria life-cycle and transmission dynamics requires extensions of typical population genetic simulators. Using a spatial discrete-loci, discrete-time structured Wright Fisher framework, we simulate malaria population genetics forwards in time. Users are then able to capture the full Ancestral Recombination Graph.
Authors:
polySimIBD_1.1.0.tar.gz
polySimIBD_1.1.0.zip(r-4.7)polySimIBD_1.1.0.zip(r-4.6)polySimIBD_1.1.0.zip(r-4.5)
polySimIBD_1.1.0.tgz(r-4.6-x86_64)polySimIBD_1.1.0.tgz(r-4.6-arm64)polySimIBD_1.1.0.tgz(r-4.5-x86_64)polySimIBD_1.1.0.tgz(r-4.5-arm64)
polySimIBD_1.1.0.tar.gz(r-4.7-arm64)polySimIBD_1.1.0.tar.gz(r-4.7-x86_64)polySimIBD_1.1.0.tar.gz(r-4.6-arm64)polySimIBD_1.1.0.tar.gz(r-4.6-x86_64)
polySimIBD_1.1.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
polySimIBD/json (API)
NEWS
| # Install 'polySimIBD' in R: |
| install.packages('polySimIBD', repos = c('https://plasmogenepi.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/nickbrazeau/polysimibd/issues
Last updated from:9046b62014. Checks:11 NOTE, 2 OK. Indexed: no.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-arm64 | NOTE | 463 | ||
| linux-devel-x86_64 | NOTE | 388 | ||
| source / vignettes | OK | 227 | ||
| linux-release-arm64 | NOTE | 454 | ||
| linux-release-x86_64 | NOTE | 328 | ||
| macos-release-arm64 | NOTE | 345 | ||
| macos-release-x86_64 | NOTE | 966 | ||
| macos-oldrel-arm64 | NOTE | 300 | ||
| macos-oldrel-x86_64 | NOTE | 631 | ||
| windows-devel | NOTE | 388 | ||
| windows-release | NOTE | 376 | ||
| windows-oldrel | NOTE | 403 | ||
| wasm-release | OK | 132 |
Exports:%>%bvtreeToNewickget_argget_bvibdget_effective_coiget_within_ibdsim_swfsubset_bvtree
Dependencies:clicpp11farverggplot2gluegoodegggtableisobandlabelinglifecyclemagrittrpurrrR6RColorBrewerRcpprlangS7scalesvctrsviridisLitewithr
Discrete-Time Discrete-Loci Structured Wright Fisher Malaria Model Overview
Rendered fromorig_mod_framework.Rmdusingknitr::rmarkdownon May 13 2026.Last update: 2024-07-01
Started: 2023-06-11
Extension of Structured Model for Spacee
Rendered fromspatial_extension.Rmdusingknitr::rmarkdownon May 13 2026.Last update: 2024-07-01
Started: 2023-06-11
Installing polySimIBD
Rendered frominstallation.Rmdusingknitr::rmarkdownon May 13 2026.Last update: 2024-07-01
Started: 2023-06-11
