Package: polySimIBD 1.1.0

Nick Brazeau

polySimIBD: Structured Wright Fisher Simulator for Malaria Genetics

Unique features of the malaria life-cycle and transmission dynamics requires extensions of typical population genetic simulators. Using a spatial discrete-loci, discrete-time structured Wright Fisher framework, we simulate malaria population genetics forwards in time. Users are then able to capture the full Ancestral Recombination Graph.

Authors:Nick Brazeau [aut, cre], Bob Verity [aut]

polySimIBD_1.1.0.tar.gz
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polySimIBD_1.1.0.tgz(r-4.4-arm64)polySimIBD_1.1.0.tgz(r-4.4-x86_64)polySimIBD_1.1.0.tgz(r-4.3-arm64)polySimIBD_1.1.0.tgz(r-4.3-x86_64)
polySimIBD_1.1.0.tar.gz(r-4.5-noble)polySimIBD_1.1.0.tar.gz(r-4.4-noble)
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polySimIBD.pdf |polySimIBD.html✨
polySimIBD/json (API)
NEWS

Peer review:

Bug tracker:https://github.com/nickbrazeau/polysimibd/issues

On CRAN:

8 exports 1 stars 0.82 score 31 dependencies

Last updated 2 months agofrom:2bf75b73bcf9170a718f2766ad0b3aeb7df7f47f

Exports:%>%bvtreeToNewickget_argget_bvibdget_effective_coiget_within_ibdsim_swfsubset_bvtree

Dependencies:clicolorspacefansifarverggplot2gluegoodegggtableisobandlabelinglatticelifecyclemagrittrMASSMatrixmgcvmunsellnlmepillarpkgconfigpurrrR6RColorBrewerRcpprlangscalestibbleutf8vctrsviridisLitewithr