Finalized documentation and additional functions for the spatial discrete-time discrete-loci structured Wright-Fisher Model. New functions include a C++ version of the IBD calculation (get_bvibd) and a function to convert marginal bvtrees into Newick trees (bvtreeToNewick).
Extension of the discrete-time discrete-loci structured Wright-Fisher Model for spatial "meta-populations". This model now assumes that there are spatial "meta-demes" and within each deme there are multiple hosts, each of who is considered as a "micro-deme" to model COI.
Add "get realized"" functions for COI and IBD.
The original discrete-time discrete-loci structured Wright-Fisher Model. A single "meta-deme" is considered with each host considered a "micro-deme". The full mathematical model is described in: Verity, Aydemir, Brazeau et al. 20202 Nat. Comms. (PMC7192906).