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  1. coiaf::example_real_data
    Example real data
  2. dcifer::dres
    Dcifer results
  3. dcifer::dsmp
    Sample data
  4. dcifer::revals
    Parameter grid
  5. discent::IBD_simulation_data
    Simulated Identity by Descent Data for DISC Analysis
  6. DRpower::df_sim
    Summary of simulations from the threshold analysis
  7. DRpower::df_ss
    Minimum sample sizes for the threshold analysis
  8. DRpower::historical_data
    Data from historical pfhrp2 studies that passed filters for inclusion into an ICC analysis.
  9. FreqEstimationModel::data_summary
  10. FreqEstimationModel::data_summary
  11. hierfstat::cont.isl
    A genetic dataset from a diploid organism in a continent-island model
  12. hierfstat::cont.isl99
    A genetic dataset from a diploid organism in a continent-island model
  13. hierfstat::crocrussula
    Genotypes and sex of 140 shrews Crocidura russula
  14. hierfstat::diploid
    A genetic dataset from a diploid organism
  15. hierfstat::exhier
    Example data set with 4 levels, one diploid and one haploid locus
  16. hierfstat::gtrunchier
    Genotypes at 6 microsatellite loci of Galba truncatula from different patches in Western Switzerland
  17. hierfstat::yangex
    Example data set from Yang (1998) appendix
  18. hrp2malaRia::DRC
    DRC Seaosnal data to match regions from Parr et al. 2016 JID
  19. hrp2malaRia::eq.0
    Equilibrium conditions for model. Also stored internally for model use when package is not loaded
  20. isoRelate::annotation_genes
    Plasmodium Falciparum Gene Annotation Dataset
  21. isoRelate::highlight_genes
    Plasmodium Falciparum Gene Highlight Dataset
  22. isoRelate::my_ibd
    IBD Segments For The Papua New Guinea Dataset
  23. isoRelate::png_genotypes
    Filtered Genotypes For The Papua New Guinea Dataset
  24. isoRelate::png_ibd
    IBD Segments For The Papua New Guinea Dataset
  25. isoRelate::png_parameters
    IBD Parameter Estimates For The Papua New Guinea Dataset
  26. isoRelate::png_pedmap
    Papua New Guinea Plasmodium Falciparum Dataset
  27. magenta::admin_units_seasonal
    Admin level 1 africa seasonal parameters
  28. magenta::drug_table
    Drug Efficacy by Genotype Table
  29. magenta::importations
    Importation data
  30. magenta::irs_2000_2015
    IRS for 2000 to 2015
  31. magenta::itn_2000_2015
    ITN for 2000 to 2015
  32. malaria.em::geno
    EM Estimation of Malaria Haplotype Probabilities and Number of Infections from Multiply Infected Human Blood Samples
    matrix|200 x 2
  33. moimix::maf_summary
    Minor Allele Frequenies of ~ 30,000 Plasmodium falciparum SNPs.
  34. moire::mcmc_results
    MCMC results from using the packaged simulated data and calling 'run_mcmc()'
  35. moire::namibia_data
    Genetic and epidemiological data from Namibia
  36. moire::regional_allele_frequencies
    Allele frequencies for different regions
  37. moire::simulated_data
    Simulated genotyping data
  38. paneljudge::chr_lengths
    Data on chromosome lengths.
  39. paneljudge::frequencies
    Data on allele frequencies of the example GTseq panel.
  40. paneljudge::markers
    Data on markers of the example GTseq panel.
  41. pixelate.fork::CentralAfrica_Pf_incidence
    _Plasmodium falciparum_ predicted incidence
  42. pixelate.fork::CentralAfrica_shp
    Shape files for central Africa
    SpatialPolygonsDataFrame
  43. pixelate.fork::SubSaharanAfrica_Pf_incidence
    _Plasmodium falciparum_ predicted incidence
  44. pixelate.fork::SubSaharanAfrica_shp
    Shape files for sub-Saharan Africa
    SpatialPolygonsDataFrame
  45. Pv3Rs::fs_VHX_BPD
    Allele frequencies computed using example _Plasmodium vivax_ data
  46. Pv3Rs::ys_VHX_BPD
    Example _Plasmodium vivax_ data
  47. snp.slicer::example_read0
    Example Read Count Data - Reference Alleles
    matrix|200 x 96
  48. snp.slicer::example_read1
    Example Read Count Data - Alternate Alleles
    matrix|200 x 96
  49. snp.slicer::example_snp_data
    Example SNP Data