Package: moire 3.5.0
Maxwell Murphy
moire: Multiplicity of Infection and Allele Frequency Recovery from Noisy Polyallelic Genetics Data
A Markov Chain Monte Carlo (MCMC) based approach to Bayesian estimation of individual level multiplicity of infection, within host relatedness, and population allele frequencies from polyallelic genetic data.
Authors:
moire_3.5.0.tar.gz
moire_3.5.0.zip(r-4.7)moire_3.5.0.zip(r-4.6)moire_3.5.0.zip(r-4.5)
moire_3.5.0.tgz(r-4.6-x86_64)moire_3.5.0.tgz(r-4.6-arm64)moire_3.5.0.tgz(r-4.5-x86_64)moire_3.5.0.tgz(r-4.5-arm64)
moire_3.5.0.tar.gz(r-4.7-arm64)moire_3.5.0.tar.gz(r-4.7-x86_64)moire_3.5.0.tar.gz(r-4.6-arm64)moire_3.5.0.tar.gz(r-4.6-x86_64)
moire_3.5.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
moire/json (API)
NEWS
| # Install 'moire' in R: |
| install.packages('moire', repos = c('https://plasmogenepi.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/eppicenter/moire/issues
Pkgdown/docs site:https://eppicenter.github.io
- mcmc_results - MCMC results from using the packaged simulated data and calling 'run_mcmc()'
- namibia_data - Genetic and epidemiological data from Namibia
- regional_allele_frequencies - Allele frequencies for different regions
- simulated_data - Simulated genotyping data
Last updated from:656dcfbb82. Checks:13 OK. Indexed: no.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-arm64 | OK | 180 | ||
| linux-devel-x86_64 | OK | 196 | ||
| source / vignettes | OK | 284 | ||
| linux-release-arm64 | OK | 192 | ||
| linux-release-x86_64 | OK | 191 | ||
| macos-release-arm64 | OK | 161 | ||
| macos-release-x86_64 | OK | 216 | ||
| macos-oldrel-arm64 | OK | 107 | ||
| macos-oldrel-x86_64 | OK | 360 | ||
| windows-devel | OK | 208 | ||
| windows-release | OK | 206 | ||
| windows-oldrel | OK | 213 | ||
| wasm-release | OK | 165 |
Exports:calculate_hecalculate_med_allele_freqscalculate_naive_allele_frequenciescalculate_naive_coicalculate_naive_coi_offsetload_delimited_dataload_long_form_dataplot_chain_swapsrdirichletrun_mcmcsimulate_allele_frequenciessimulate_datasimulate_observed_allelesimulate_observed_genotypesimulate_sample_coisimulate_sample_genotypesummarize_allele_freq_fnsummarize_allele_freqssummarize_coisummarize_effective_coisummarize_epsilon_negsummarize_epsilon_possummarize_hesummarize_relatedness
Dependencies:BHclicpp11dplyrfarvergenericsggplot2gluegtableisobandlabelinglifecyclemagrittrpillarpkgconfigpurrrR6RColorBrewerRcppRcppParallelRcppProgressrlangS7scalesstringistringrtibbletidyrtidyselectutf8vctrsviridisLitewithr
