Package: MIPanalyzer 1.1.0
MIPanalyzer: Filtering and analysis of MIP data
Filtering and analysis of MIP data.
Authors:
MIPanalyzer_1.1.0.tar.gz
MIPanalyzer_1.1.0.zip(r-4.5)MIPanalyzer_1.1.0.zip(r-4.4)MIPanalyzer_1.1.0.zip(r-4.3)
MIPanalyzer_1.1.0.tgz(r-4.4-arm64)MIPanalyzer_1.1.0.tgz(r-4.4-x86_64)MIPanalyzer_1.1.0.tgz(r-4.3-arm64)MIPanalyzer_1.1.0.tgz(r-4.3-x86_64)
MIPanalyzer_1.1.0.tar.gz(r-4.5-noble)MIPanalyzer_1.1.0.tar.gz(r-4.4-noble)
MIPanalyzer_1.1.0.tgz(r-4.4-emscripten)MIPanalyzer_1.1.0.tgz(r-4.3-emscripten)
MIPanalyzer.pdf |MIPanalyzer.html✨
MIPanalyzer/json (API)
# Install MIPanalyzer in R: |
install.packages('MIPanalyzer', repos = c('https://plasmogenepi.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/mrc-ide/mipanalyzer/issues
Last updated 7 months agofrom:72f692e8c70b607f8ae65dfaf3d2e417acb8582d
Exports:check_MIPanalyzer_loadedexplore_filter_coverage_lociexplore_filter_coverage_samplesfilter_countsfilter_coverage_locifilter_coverage_samplesfilter_locifilter_loci_invariantfilter_overcountsfilter_samplesfilter_wsafget_genomic_distanceget_IB_mixtureget_IBS_distanceget_spatial_distanceget_wsafinbreeding_mleis.mipanalyzer_biallelicis.mipanalyzer_multialleliclonlat_to_bearingmipanalyzer_biallelic_to_vcfRmipanalyzer_filepca_wsafpcoa_genomic_distancePf_chrom_lengthsplot_coverageplot_distanceplot_mapplot_pcaplot_pca_contributionplot_pca_varianceplot_pcoaplot_wsafrbetabinomrdirichletsim_biallelicvcf_to_mipanalyzer_biallelicvcf_to_mipanalyzer_multiallelic
Dependencies:apeaskpassbase64encbslibcachemcliclustercodacolorspacecpp11crosstalkcurldata.tabledigestdotCall64dplyrevaluatefansifarverfastmapfieldsfontawesomefsgenericsggplot2gluegtablehighrhtmltoolshtmlwidgetshttrisobandjquerylibjsonliteknitrlabelinglaterlatticelazyevallifecyclemagrittrmapsMASSMatrixmemoisememusemgcvmimemunsellnlmeopensslpermutepillarpinfsc50pkgconfigplotlyplyrpromisespurrrR6rappdirsrasterRColorBrewerRcppreshape2rlangrmarkdownrworldmapsassscalesspspamstringistringrsysterratibbletidyrtidyselecttinytexutf8vcfRvctrsveganviridisLitewithrxfunyaml
Analysis of population structure
Rendered fromstructure_analysis.Rmd
usingknitr::rmarkdown
on Jun 25 2024.Last update: 2023-12-12
Started: 2023-12-12
Comparing genetic distances
Rendered fromgenetic_distances.Rmd
usingknitr::rmarkdown
on Jun 25 2024.Last update: 2023-12-12
Started: 2023-12-12
Installation
Rendered frominstallation.Rmd
usingknitr::knitr
on Jun 25 2024.Last update: 2023-12-12
Started: 2023-12-11
Reading in and filtering data
Rendered fromfiltering_data.Rmd
usingknitr::rmarkdown
on Jun 25 2024.Last update: 2023-12-12
Started: 2023-12-11