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      "page": "explore_filter_coverage_loci",
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      "topics": [
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      "title": "Explore sample coverage prior to filtering",
      "topics": [
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    },
    {
      "page": "filter_counts",
      "title": "Filter alleles based on raw counts",
      "topics": [
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      ]
    },
    {
      "page": "filter_coverage_loci",
      "title": "Filter loci based on coverage",
      "topics": [
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    },
    {
      "page": "filter_coverage_samples",
      "title": "Filter samples based on coverage",
      "topics": [
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    },
    {
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      "title": "Filter out some loci",
      "topics": [
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    },
    {
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      "title": "Filter loci to drop invariant sites",
      "topics": [
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    },
    {
      "page": "filter_overcounts",
      "title": "Filter out over-counts",
      "topics": [
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      ]
    },
    {
      "page": "filter_samples",
      "title": "Filter out some samples",
      "topics": [
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    },
    {
      "page": "filter_wsaf",
      "title": "Filter alleles based on within-sample allele frequencies",
      "topics": [
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    },
    {
      "page": "get_genomic_distance",
      "title": "Get genomic distance between samples",
      "topics": [
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      "topics": [
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      "topics": [
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      "topics": [
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    {
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      "title": "Get within-sample allele frequencies",
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      "page": "is.mipanalyzer_multiallelic",
      "title": "Determine if object is of class mipanalyzer_multiallelic",
      "topics": [
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    {
      "page": "MIPanalyzer",
      "title": "MIPanalyzer",
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        "MIPanalyzer"
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    },
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      "title": "Converts a MIPanalyzer biallelic object to vcfR",
      "topics": [
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    {
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