Package: MALECOT 0.1.1

Bob Verity

MALECOT: Joint estimation of COI and population structure for malaria genetic data

Carries out joint estimation of complexity of infection (COI) and population structure on malaria genetic data. Assumes a simple model in which individuals have genotypes sampled from one or more subpopulations, and the number of genotypes in an individual is equal to the COI, which is also unknown. All unknown parameters are inferred using MCMC.

Authors:Bob Verity [aut, cre]

MALECOT_0.1.1.tar.gz
MALECOT_0.1.1.zip(r-4.5)MALECOT_0.1.1.zip(r-4.4)MALECOT_0.1.1.zip(r-4.3)
MALECOT_0.1.1.tgz(r-4.4-arm64)MALECOT_0.1.1.tgz(r-4.4-x86_64)MALECOT_0.1.1.tgz(r-4.3-arm64)MALECOT_0.1.1.tgz(r-4.3-x86_64)
MALECOT_0.1.1.tar.gz(r-4.5-noble)MALECOT_0.1.1.tar.gz(r-4.4-noble)
MALECOT_0.1.1.tgz(r-4.4-emscripten)MALECOT_0.1.1.tgz(r-4.3-emscripten)
MALECOT.pdf |MALECOT.html✨
MALECOT/json (API)

Peer review:

Bug tracker:https://github.com/bobverity/malecot/issues

On CRAN:

35 exports 3 stars 0.36 score 31 dependencies

Last updated 5 years agofrom:713d220d14f282dc63618ca10c83e2a902a83266

Exports:active_setbind_data_biallelicbind_data_multialleliccheck_MALECOT_loadeddelete_setget_ESSget_group_orderis.malecot_projectmalecot_filemalecot_projectmore_coloursnew_setplot_acfplot_COIplot_COI_meanplot_couplingplot_densityplot_eplot_GTI_pathplot_logevidence_Kplot_logevidence_modelplot_loglikeplot_loglike_dignosticplot_pplot_posterior_Kplot_posterior_modelplot_prior_COIplot_prior_pplot_structureplot_traceprint_fullrecalculate_evidencerun_mcmcsim_datasim_data_safe

Dependencies:clicodacolorspacefansifarverggplot2gluegridExtragtableisobandlabelinglatticelifecyclemagrittrMASSMatrixmgcvmunsellnlmepillarpkgconfigR6RColorBrewerRcpprlangscalestibbleutf8vctrsviridisLitewithr