Package: variantstring 1.7.0

Bob Verity

variantstring: Functions for working with variant string format

Contains a series of functions for working with genetic information encoded in variant string format. Includes methods for comparing and manipulating strings.

Authors:Bob Verity [aut, cre]

variantstring_1.7.0.tar.gz
variantstring_1.7.0.zip(r-4.5)variantstring_1.7.0.zip(r-4.4)variantstring_1.7.0.zip(r-4.3)
variantstring_1.7.0.tgz(r-4.4-any)variantstring_1.7.0.tgz(r-4.3-any)
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variantstring_1.7.0.tgz(r-4.4-emscripten)variantstring_1.7.0.tgz(r-4.3-emscripten)
variantstring.pdf |variantstring.html✨
variantstring/json (API)

# Install 'variantstring' in R:
install.packages('variantstring', repos = c('https://plasmogenepi.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/mrc-ide/variantstring/issues

On CRAN:

1.70 score 1 scripts 17 exports 21 dependencies

Last updated 16 days agofrom:3e0f83f680. Checks:7 OK. Indexed: no.

TargetResultLatest binary
Doc / VignettesOKJan 16 2025
R-4.5-winOKJan 16 2025
R-4.5-linuxOKJan 16 2025
R-4.4-winOKJan 16 2025
R-4.4-macOKJan 16 2025
R-4.3-winOKJan 16 2025
R-4.3-macOKJan 16 2025

Exports:allowed_amino_acidscheck_position_stringcheck_variant_stringcompare_position_stringcompare_variant_stringcount_het_locidrop_read_countsextract_single_locus_variantsget_consistent_variantslong_to_positionlong_to_variantorder_position_stringorder_variant_stringposition_from_variant_stringposition_to_longsubset_positionvariant_to_long

Dependencies:clicpp11dplyrfansigenericsgluelifecyclemagrittrpillarpkgconfigpurrrR6rlangstringistringrtibbletidyrtidyselectutf8vctrswithr