Package: coiaf 0.1.2

Aris Paschalidis

coiaf: Complexity of Infection Estimation with Allele Frequencies

Provides a direct method for estimating complexity of infection using easily calculated measures from sequence read depth data.

Authors:Aris Paschalidis [aut, cre], OJ Watson [aut]

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coiaf.pdf |coiaf.html✨
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NEWS

Peer review:

Bug tracker:https://github.com/bailey-lab/coiaf/issues

On CRAN:

allele-frequenciescoicomplexity-of-infectionestimation

23 exports 3 stars 0.49 score 74 dependencies

Last updated 1 years agofrom:3df5509ceb4dd095ff5910a9d8a18a5e3551e149

Exports::=.data%>%as_labelas_namebootstrap_cicompute_coicompute_coi_regressioncont_sensitivitydisc_sensitivityenquoenquoserror_plotlikelihoodoptimize_coioptimize_coi_regressionprocess_realprocess_simsensitivity_plotsim_biallelictheme_coiaftheoretical_coiworld_map

Dependencies:backportsbase64encbootbroombslibcachemcheckmatecliclustercolorspacecpp11data.tabledigestdplyrevaluatefansifarverfastmapfontawesomeforeignFormulafsgenericsggplot2gluegridExtragtablehighrHmischtmlTablehtmltoolshtmlwidgetsisobandjquerylibjsonliteknitrlabelinglatticelifecyclemagrittrMASSmathjaxrMatrixmemoisemgcvmimemunsellnlmennetpillarpkgconfigpurrrR6rappdirsRColorBrewerrlangrmarkdownrpartrstudioapisassscalesstringistringrtibbletidyrtidyselecttinytexutf8vctrsviridisviridisLitewithrxfunyaml