aimeertaylor. To fix this you can add URL: https://plasmogenepi.r-universe.dev/FreqEstimationModel to the package DESCRIPTION file. See also theR-universe documentation.Package: FreqEstimationModel 0.1.0
Aimee Taylor
FreqEstimationModel: Multi-SNP Haplotype Frequency Estimation
A method for multi-SNP haplotype frequency estimation.
Authors:
FreqEstimationModel_0.1.0.tar.gz
FreqEstimationModel_0.1.0.tgz(r-4.6-any)FreqEstimationModel_0.1.0.tgz(r-4.5-any)
FreqEstimationModel_0.1.0.tar.gz(r-4.7-any)FreqEstimationModel_0.1.0.tar.gz(r-4.6-any)
FreqEstimationModel_0.1.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
FreqEstimationModel/json (API)
| # Install 'FreqEstimationModel' in R: |
| install.packages('FreqEstimationModel', repos = c('https://plasmogenepi.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/aimeertaylor/freqestimationmodel/issues
Last updated from:6e1c796f52. Checks:5 ERROR, 3 FAIL, 1 OK. Indexed: no.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel | ERROR | 109 | ||
| source / vignettes | ERROR | 201 | ||
| linux-release | ERROR | 143 | ||
| macos-release | ERROR | 93 | ||
| macos-oldrel | ERROR | 72 | ||
| windows-devel | FAIL | 46 | ||
| windows-release | FAIL | 59 | ||
| windows-oldrel | FAIL | 64 | ||
| wasm-release | OK | 91 |
Exports:calculate_genotype_counts_truncatedcalculate_log_genotype_counts_proposal_ratiocalculate_log_moi_proposal_ratiocompatible_genotypesdata_genotype_count_compatibilityddirichletdraw_frequency_proposed_childdraw_genotype_counts_initialdraw_moi_initialdraw_moi_proposedlog_likelihood_NGSlog_likelihood_prevalencelog_moi_prior_calculation_geomlog_moi_prior_calculation_nbinomlog_moi_prior_calculation_poislog_moi_prior_calculation_uniflog_prior_moi_ratio_geomlog_prior_moi_ratio_nbinomlog_prior_moi_ratio_poislog_prior_moi_ratio_unifmcmc_samplingmcmc_sampling_parallelmy_log_dmultinompreprocess_datardirichletupdate_genotype_countsupdate_y_mixed_addupdate_y_mixed_sub
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Calculate legal genotype count moves | calculate_genotype_counts_truncated |
| Calculate the log genotype counts proposal ratio | calculate_log_genotype_counts_proposal_ratio |
| Calculate log MOI proposal ratio | calculate_log_moi_proposal_ratio |
| Compatible genotypes | compatible_genotypes |
| Data genotype count compatibility | data_genotype_count_compatibility |
| Dirichlet density | ddirichlet |
| Draw frequency proposed child | draw_frequency_proposed_child |
| Draw initial genotype counts | draw_genotype_counts_initial |
| Draw initial MOIs | draw_moi_initial |
| Propose MOI | draw_moi_proposed |
| Hello, World! | hello |
| Log likelihood, NGS data | log_likelihood_NGS |
| Log likelihood, prevalence data | log_likelihood_prevalence |
| Log moi prior | log_moi_prior_calculation_geom |
| Log moi prior | log_moi_prior_calculation_nbinom |
| Log moi prior | log_moi_prior_calculation_pois |
| Log moi prior | log_moi_prior_calculation_unif |
| lLg prior MOI ratio | log_prior_moi_ratio_geom |
| Log prior MOI ratio | log_prior_moi_ratio_nbinom |
| Log prior MOI ratio | log_prior_moi_ratio_pois |
| Log prior MOI ratio | log_prior_moi_ratio_unif |
| MCMC | mcmc_sampling |
| MCMC | mcmc_sampling_parallel |
| Log Multinomial Density | my_log_dmultinom |
| Preprocess data | preprocess_data |
| Hello, Rcpp! | rcpp_hello |
| Random draw from the dirichlet | rdirichlet |
| Update genotype counts | update_genotype_counts |
| Update mixed data samaple clone addition | update_y_mixed_add |
| Update mixed data samaple clone removal | update_y_mixed_sub |