Package: moire
Title: Multiplicity of Infection and Allele Frequency Recovery from
        Noisy Polyallelic Genetics Data
Version: 3.5.0
Authors@R: c(
    person(given = "Maxwell",
           family = "Murphy",
           role = c("aut", "cre"),
           email = "murphy2122@berkeley.edu",
           comment = c(ORCID = "0000-0003-0332-4388")),
    person(given = "Bryan",
           family = "Greenhouse",
           role = c("aut", "ths"),
           email = "bryan.greenhouse@ucsf.edu",
           comment = c(ORCID = "0000-0003-0287-9111")))
Description: A Markov Chain Monte Carlo (MCMC) based approach to
        Bayesian estimation of individual level multiplicity of
        infection, within host relatedness, and population allele
        frequencies from polyallelic genetic data.
License: GPL (>= 3)
Encoding: UTF-8
LazyData: true
LazyDataCompression: bzip2
SystemRequirements: C++17, GNU make
LinkingTo: Rcpp, RcppProgress, RcppParallel, BH
Imports: Rcpp, RcppProgress, RcppParallel, dplyr, tidyr, stats, purrr,
        rlang, ggplot2
URL: https://github.com/EPPIcenter/moire,
        https://eppicenter.github.io/moire/,
        https://eppicenter.ucsf.edu/resources
BugReports: https://github.com/EPPIcenter/moire/issues
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.1
Suggests: knitr, rmarkdown, markdown, forcats, testthat (>= 3.0.0),
        parallelly
VignetteBuilder: knitr
Depends: R (>= 4.1.0)
Config/testthat/edition: 3
Config/pak/sysreqs: make libicu-dev
Repository: https://plasmogenepi.r-universe.dev
Date/Publication: 2024-11-06 21:35:57 UTC
RemoteUrl: https://github.com/eppicenter/moire
RemoteRef: HEAD
RemoteSha: 656dcfbb827430edeffa40a0af7b44cc89f689bd
NeedsCompilation: yes
Packaged: 2026-06-07 06:41:42 UTC; root
Author: Maxwell Murphy [aut, cre] (ORCID:
    <https://orcid.org/0000-0003-0332-4388>),
  Bryan Greenhouse [aut, ths] (ORCID:
    <https://orcid.org/0000-0003-0287-9111>)
Maintainer: Maxwell Murphy <murphy2122@berkeley.edu>