Package: moimix
Title: Estimating mulitplicity of infection from high-throughput
        sequencing data
Version: 0.0.2.9001
Authors@R: "Stuart Lee <lee.s@wehi.edu.au> [aut, cre]"
Description: Evaluate multiplicity of infection (MOI) of organisms
        using binomial mixture models and other population genetics
        methods. moimix can be used to simulate single nucleotide
        variant (SNV) data from samples with known MOI.
Depends: R (>= 3.4.0), flexmix
License: GPL-3 + file LICENSE
LazyData: true
Imports: MCMCpack, foreach, SeqArray (>= 1.12.3), SeqVarTools, scales,
        RColorBrewer, IRanges, S4Vectors, GenomicRanges, BiocParallel,
        methods, stats, graphics, utils
Suggests: testthat, knitr, rmarkdown, BiocStyle
VignetteBuilder: knitr
RoxygenNote: 7.1.0
URL: https://github.com/bahlolab/moimix
BugReports: https://github.com/bahlolab/moimix/issues
Encoding: UTF-8
Config/pak/sysreqs: cmake make libicu-dev libx11-dev zlib1g-dev
Repository: https://plasmogenepi.r-universe.dev
Date/Publication: 2020-04-13 09:59:33 UTC
RemoteUrl: https://github.com/bahlolab/moimix
RemoteRef: HEAD
RemoteSha: 802eaf1fab653690b1b1f1475c879b5189ee40ae
NeedsCompilation: no
Packaged: 2026-10-09 10:21:48 UTC; root
Author: "Stuart Lee" [aut, cre]
Maintainer: "Stuart Lee" <lee.s@wehi.edu.au>