---
title: "Running the Model"
output: rmarkdown::html_vignette
vignette: >
  %\VignetteIndexEntry{Running the Model}
  %\VignetteEngine{knitr::rmarkdown}
  %\VignetteEncoding{UTF-8}
---

```{r, include = FALSE}
knitr::opts_chunk$set(
  collapse = TRUE,
  comment = "#>"
)
```

```{r setup}
library(discent) 
```

# Simulating Data for the Model
Here, we will use data that we previously simulated with the  [`polySimIBD`](https://github.com/nickbrazeau/polySimIBD) package.