{
  "_id": "6acf4acfd9de2f3f33fca583",
  "Package": "PGEhammer",
  "Type": "Package",
  "Title": "What the Package Does (Title Case)",
  "Version": "0.1.0",
  "Authors@R": "as.person(c(\n\"Bob Verity <r.verity@imperial.ac.uk> [aut, cre]\",\n\"Shazia Ruybal <s.ruybal@imperial.ac.uk> [aut]\"\n))",
  "Description": "A series of utility functions that improve the experience\nof working with other software tools in Plasmodium genomic\nepidemiology. This includes functions for wrangling data and\nvisualising outputs. Part of the PGEforge set of resources.",
  "License": "MIT + file LICENSE",
  "Encoding": "UTF-8",
  "RoxygenNote": "7.2.3",
  "BugReports": "https://github.com/mrc-ide/PGEhammer/issues",
  "Config/testthat/edition": "3",
  "Config/pak/sysreqs": "libicu-dev",
  "Repository": "https://plasmogenepi.r-universe.dev",
  "Date/Publication": "2023-12-14 17:40:11 UTC",
  "RemoteUrl": "https://github.com/mrc-ide/PGEhammer",
  "RemoteRef": "HEAD",
  "RemoteSha": "e7c46e38436f3ebb158fc9453276176192cbe88f",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-10-14 08:29:07 UTC",
    "User": "root"
  },
  "Author": "Bob Verity [aut, cre],\nShazia Ruybal [aut]",
  "Maintainer": "Bob Verity <r.verity@imperial.ac.uk>",
  "_user": "plasmogenepi",
  "_type": "src",
  "_file": "PGEhammer_0.1.0.tar.gz",
  "_fileid": "https://r2.ropensci.org/3b4c1227c914c9bcabb628184f039e96e42e6184c852bae06df6f05ab359cfa2",
  "_filesize": 80142,
  "_sha256": "3b4c1227c914c9bcabb628184f039e96e42e6184c852bae06df6f05ab359cfa2",
  "_expires": "2027-01-22T09:26:38.000Z",
  "_created": "2026-10-14T08:29:07.000Z",
  "_published": "2026-10-14T09:26:39.850Z",
  "_buildurl": "https://github.com/r-universe/plasmogenepi/actions/runs/38535084808",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_jobs": [
    {
      "job": 115757160046,
      "time": 128,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "NOTE",
      "artifact": "11879917646"
    },
    {
      "job": 115757159929,
      "time": 115,
      "config": "linux-release-x86_64",
      "r": "4.6.1",
      "check": "NOTE",
      "artifact": "11879494722"
    },
    {
      "job": 115757159988,
      "time": 126,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "NOTE",
      "artifact": "11882292513"
    },
    {
      "job": 115757160071,
      "time": 130,
      "config": "macos-release-arm64",
      "r": "4.6.1",
      "check": "NOTE",
      "artifact": "11883110803"
    },
    {
      "job": 115756022395,
      "time": 174,
      "config": "source",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "11878754716"
    },
    {
      "job": 115757159830,
      "time": 106,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "11879867774"
    },
    {
      "job": 115757160150,
      "time": 97,
      "config": "windows-devel-x86_64",
      "r": "4.7.0",
      "check": "NOTE",
      "artifact": "11879098889"
    },
    {
      "job": 115757159818,
      "time": 89,
      "config": "windows-oldrel-x86_64",
      "r": "4.5.3",
      "check": "NOTE",
      "artifact": "11879723962"
    },
    {
      "job": 115757159872,
      "time": 117,
      "config": "windows-release-x86_64",
      "r": "4.6.1",
      "check": "NOTE",
      "artifact": "11880002671"
    }
  ],
  "_upstream": "https://github.com/mrc-ide/PGEhammer",
  "_commit": {
    "id": "e7c46e38436f3ebb158fc9453276176192cbe88f",
    "author": "Shazia Ruybal Pesántez <shaziaruybal@gmail.com>",
    "committer": "GitHub <noreply@github.com>",
    "message": "Merge pull request #7 from mrc-ide/develop\n\nMerge Develop into main and add vcf2long() function to pkg",
    "time": 1702575611
  },
  "_maintainer": {
    "name": "Bob Verity",
    "email": "r.verity@imperial.ac.uk",
    "login": "bobverity",
    "description": "",
    "uuid": 9216594
  },
  "_distro": "resolute",
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 4.1.0",
      "role": "Depends"
    },
    {
      "package": "dplyr",
      "role": "Imports"
    },
    {
      "package": "rlang",
      "role": "Imports"
    },
    {
      "package": "stringr",
      "role": "Imports"
    },
    {
      "package": "tibble",
      "role": "Imports"
    },
    {
      "package": "tidyr",
      "role": "Imports"
    },
    {
      "package": "vcfR",
      "role": "Imports"
    },
    {
      "package": "testthat",
      "version": ">= 3.0.0",
      "role": "Suggests"
    }
  ],
  "_owner": "mrc-ide",
  "_selfowned": false,
  "_usedby": 0,
  "_updates": [],
  "_tags": [],
  "_stars": 0,
  "_contributors": [
    {
      "user": "bobverity",
      "count": 12,
      "uuid": 9216594
    },
    {
      "user": "shaziaruybal",
      "count": 10,
      "uuid": 11846581
    }
  ],
  "_userbio": {
    "uuid": 140542976,
    "type": "organization",
    "name": "PlasmoGenEpi",
    "followers": 1,
    "description": "We are a network of scientists who have come together since 2018 to address challenges in malaria genomic epidemiology."
  },
  "_downloads": {
    "count": 0,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/PGEhammer"
  },
  "_devurl": "https://github.com/mrc-ide/pgehammer",
  "_searchresults": 3,
  "_rbuild": "4.6.1",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/manual.pdf",
    "extra/PGEhammer.html",
    "extra/readme.html",
    "extra/readme.md",
    "LICENSE"
  ],
  "_cranurl": false,
  "_exports": [
    "square",
    "vcf2long"
  ],
  "_help": [
    {
      "page": "PGEhammer",
      "title": "PGEhammer",
      "topics": [
        "PGEhammer"
      ]
    },
    {
      "page": "square",
      "title": "Square a vector of values",
      "topics": [
        "square"
      ]
    },
    {
      "page": "vcf2long",
      "title": "Convert vcf to long format",
      "topics": [
        "vcf2long"
      ]
    }
  ],
  "_readme": "https://github.com/mrc-ide/PGEhammer/raw/HEAD/README.md",
  "_rundeps": [
    "ape",
    "cli",
    "cluster",
    "cpp11",
    "digest",
    "dplyr",
    "generics",
    "glue",
    "lattice",
    "lifecycle",
    "magrittr",
    "MASS",
    "Matrix",
    "memuse",
    "mgcv",
    "nlme",
    "permute",
    "pillar",
    "pinfsc50",
    "pkgconfig",
    "purrr",
    "R6",
    "Rcpp",
    "rlang",
    "stringi",
    "stringr",
    "tibble",
    "tidyr",
    "tidyselect",
    "utf8",
    "vcfR",
    "vctrs",
    "vegan",
    "viridisLite",
    "withr"
  ],
  "_score": 1.6989700043360187,
  "_indexed": false,
  "_nocasepkg": "pgehammer",
  "_universes": [
    "plasmogenepi"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "0.1.0",
      "date": "2026-10-14T08:30:57.000Z",
      "distro": "resolute",
      "commit": "e7c46e38436f3ebb158fc9453276176192cbe88f",
      "fileid": "https://r2.ropensci.org/33e855e2da8b3c9fc52cce864977bd6bca639869f4ba797a5bfdc1769c3c5beb",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/plasmogenepi/actions/runs/38535084808"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "0.1.0",
      "date": "2026-10-14T08:30:57.000Z",
      "distro": "resolute",
      "commit": "e7c46e38436f3ebb158fc9453276176192cbe88f",
      "fileid": "https://r2.ropensci.org/904e83234a3a03a0d3bb780d4038c97e51be7edac4664418e875b12b552a4f2e",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/plasmogenepi/actions/runs/38535084808"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "0.1.0",
      "date": "2026-10-14T09:18:24.000Z",
      "commit": "e7c46e38436f3ebb158fc9453276176192cbe88f",
      "fileid": "https://r2.ropensci.org/d1941a1a9ae6696581adc8d6d5064fd61ef6d7a7c56c1af644ee9ca31c089cec",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/plasmogenepi/actions/runs/38535084808"
    },
    {
      "r": "4.6.1",
      "os": "mac",
      "version": "0.1.0",
      "date": "2026-10-14T09:25:31.000Z",
      "commit": "e7c46e38436f3ebb158fc9453276176192cbe88f",
      "fileid": "https://r2.ropensci.org/85b02a12a1f9e7a23b6615dcbdf65f4031c8a15e0707af0ca583679fe0e87d2b",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/plasmogenepi/actions/runs/38535084808"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "0.1.0",
      "date": "2026-10-14T08:31:11.000Z",
      "commit": "e7c46e38436f3ebb158fc9453276176192cbe88f",
      "fileid": "https://r2.ropensci.org/a8de9633913bb75541ce1854eda19de5254088277cbcc506b84c7747665f084f",
      "status": "success",
      "buildurl": "https://github.com/r-universe/plasmogenepi/actions/runs/38535084808"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "0.1.0",
      "date": "2026-10-14T08:30:24.000Z",
      "commit": "e7c46e38436f3ebb158fc9453276176192cbe88f",
      "fileid": "https://r2.ropensci.org/cc381cc3bc61ecc00570fb7cd7b79202fa5ee35354059306f8dc9dcdae32b407",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/plasmogenepi/actions/runs/38535084808"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "0.1.0",
      "date": "2026-10-14T08:30:11.000Z",
      "commit": "e7c46e38436f3ebb158fc9453276176192cbe88f",
      "fileid": "https://r2.ropensci.org/18df6b35dbc1e266f6ae0b8e757e5f1c7f5ef8d57cd31ee7e5fc4b1fbd91b6e1",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/plasmogenepi/actions/runs/38535084808"
    },
    {
      "r": "4.6.1",
      "os": "win",
      "version": "0.1.0",
      "date": "2026-10-14T08:30:42.000Z",
      "commit": "e7c46e38436f3ebb158fc9453276176192cbe88f",
      "fileid": "https://r2.ropensci.org/ceba52a3125ddee4c79f632f994c10449811f5bb5ac2a4df0ed67800e91d59bf",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/plasmogenepi/actions/runs/38535084808"
    }
  ]
}