MIPanalyzer

MIPanalyzer is a tool for analyzing MIP (molecular inversion probe) data. It performs the following functions:

• Reading in raw data, usually in the form of a vcf file produced by MIPwrangler
• Filtering samples and loci based on coverage, missingness, and other metrics
• Performing simple population genetic analyses, such as PCA and basic pairwise distance metrics

All documentation, including installation instructions and tutorials, are on the MIPanalyzer website.

Version History

The current release version of the software is v1.1.0, released 12 Dec 2023.

Contributors

• Bob Verity
• OJ Watson
• Nick Brazeau