Package: MALECOT
Type: Package
Title: Joint estimation of COI and population structure for malaria
        genetic data
Version: 0.1.1
Authors@R: person("Bob", "Verity", role = c("aut", "cre"), email = "r.verity@imperial.ac.uk")
Maintainer: Bob Verity <r.verity@imperial.ac.uk>
Description: Carries out joint estimation of complexity of infection
        (COI) and population structure on malaria genetic data. Assumes
        a simple model in which individuals have genotypes sampled from
        one or more subpopulations, and the number of genotypes in an
        individual is equal to the COI, which is also unknown. All
        unknown parameters are inferred using MCMC.
License: MIT + file LICENSE
BugReports: https://github.com/bobverity/malecot/issues
Encoding: UTF-8
RoxygenNote: 6.1.1
LinkingTo: Rcpp
Imports: Rcpp (>= 0.12.14), parallel, coda, ggplot2, gridExtra,
        RColorBrewer
SystemRequirements: C++11
Suggests: testthat, covr, knitr, rmarkdown, tidyr, plotly, gridExtra
VignetteBuilder: knitr
Repository: https://plasmogenepi.r-universe.dev
Date/Publication: 2019-02-26 14:55:58 UTC
RemoteUrl: https://github.com/bobverity/MALECOT
RemoteRef: HEAD
RemoteSha: 713d220d14f282dc63618ca10c83e2a902a83266
NeedsCompilation: yes
Packaged: 2026-05-29 11:15:54 UTC; root
Author: Bob Verity [aut, cre]