To cite package ‘DEploid’ in publications use:

  Sha Joe Zhu, Jacob Almagro-Garcia, Gil McVean (2017). “Deconvoluting
  multiple infections in _Plasmodium falciparum_ from high throughput
  sequencing data.” _bioRxiv_. doi:10.1101/099499
  <https://doi.org/10.1101/099499>,
  <http://www.biorxiv.org/content/early/2017/01/10/099499>.

A BibTeX entry for LaTeX users is

  @Article{,
    title = {Deconvoluting multiple infections in \emph{Plasmodium falciparum} from high throughput sequencing data},
    author = {{Sha Joe Zhu} and {Jacob Almagro-Garcia} and {Gil McVean}},
    year = {2017},
    journal = {bioRxiv},
    doi = {10.1101/099499},
    publisher = {Cold Spring Harbor Labs Journals},
    url = {http://www.biorxiv.org/content/early/2017/01/10/099499},
  }